Package: gauseR 1.2
gauseR: Lotka-Volterra Models for Gause's 'Struggle for Existence'
A collection of tools and data for analyzing the Gause microcosm experiments, and for fitting Lotka-Volterra models to time series data. Includes methods for fitting single-species logistic growth, and multi-species interaction models, e.g. of competition, predator/prey relationships, or mutualism. See documentation for individual functions for examples. In general, see the lv_optim() function for examples of how to fit parameter values in multi-species systems. Note that the general methods applied here, as well as the form of the differential equations that we use, are described in detail in the Quantitative Ecology textbook by Lehman et al., available at <http://hdl.handle.net/11299/204551>, and in Lina K. Mühlbauer, Maximilienne Schulze, W. Stanley Harpole, and Adam T. Clark. 'gauseR': Simple methods for fitting Lotka-Volterra models describing Gause's 'Struggle for Existence' in the journal Ecology and Evolution.
Authors:
gauseR_1.2.tar.gz
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gauseR.pdf |gauseR.html✨
gauseR/json (API)
| # Install 'gauseR' in R: |
| install.packages('gauseR', repos = c('https://adamtclark.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/adamtclark/gauser/issues
- gause_1931_AmN_f01 - Growth of population of the flour beetle Tribolium confusum in 16 and 64 grams of flour
- gause_1931_AmN_f02 - The influence of quantity of food on the asymptotic population of Triboliurn confusum.
- gause_1931_AmN_f03 - The influence of temperature on the asymptotic population of Moina macrocopa.
- gause_1932_QR_t05 - The influence of temperature on the growth of the yeast Saccharomyces cerevisiae
- gause_1934_book_app_t01 - Raw data on the abundances and volumes of Saccharomyces cerevisiae and Schizosaccharomyces kephir
- gause_1934_book_app_t02 - Alcohol production of Saccharomyces cerevisiae and Schizosaccharomyces kephir
- gause_1934_book_app_t03 - Raw data of Paramecium caudatum and Paramecium aurelia grown in Monoculture and Mixture
- gause_1934_book_app_t04 - Raw data of Paramecium caudatum and Paramecium aurelia grown on different media
- gause_1934_book_app_t05 - Raw data of Stylonychia pustulata in monoculture and mixture with and Paramecium aurelia and P. caudatum
- gause_1934_book_f04 - Growth of Paramecium caudatum
- gause_1934_book_f09 - Growth of Saccharomyces cerevisiae
- gause_1934_book_f10 - Growth of Saccharomyces cerevisiae with medium change
- gause_1934_book_f11 - Gause Yeast Data
- gause_1934_book_f12 - Growth of Saccharomyces cerevisiae with additional alcohol
- gause_1934_book_f13 - Growth of Saccharomyces cerevisiae and Schizosaccaromyces kephir in mixed population
- gause_1934_book_f14 - Growth of Saccharomyces cerevisiae in mixed population
- gause_1934_book_f15 - Growth of Schizosaccaromyces kephir in mixed population - anaerobic
- gause_1934_book_f16 - Growth of Schizosaccaromyces kephir and Saccharomyces cerevisiae in mixed population -aerobic
- gause_1934_book_f18 - Growth of Paramecium caudatum and Stylonychia mytilis in Mixture
- gause_1934_book_f19 - Growth of Paramecium caudatum and Stylonychia mytilis in Mixture with Wild bacteria
- gause_1934_book_f21 - Growth of Paramecium caudatum and Paramecium aurelia in Monoculture
- gause_1934_book_f22 - Paramecium competition experiment
- gause_1934_book_f23 - Growth of Paramecium caudatum and Paramecium aurelia with wild bacteria
- gause_1934_book_f24 - Growth of Paramecium caudatum and Paramecium aurelia in Mixture on Half Loop Medium
- gause_1934_book_f25 - Growth of Paramecium caudatum and Paramecium aurelia in Mixture on One Loop Medium
- gause_1934_book_f26 - Growth of Stylorzychia pustulata in Monoculture and in Mixture
- gause_1934_book_f28 - Elementary interaction between Didinium nasutum and Paramecium caudatum
- gause_1934_book_f29 - Paramecium/Didinium predator-prey experiment
- gause_1934_book_f30 - The elementary interaction between Didinium nasutum and Paramecium caudatum
- gause_1934_book_f31 - The interaction between Didinium nasutum and Paramecium caudatum on oat medium
- gause_1934_book_f32 - Didinium/Paramecium predator/prey experiment
- gause_1934_book_f39.1 - The interaction between Paramecium bursaria and Schizosaccharomyces pombe
- gause_1934_science_f01 - Didinium/Paramecium predator/prey experiment
- gause_1934_science_f02_03 - Paramecium competition experiment
- gause_1936_AnE_f01 - Interaction between predators (Cheyletus eruditus) and prey (Aleuiroglyphus agilis) on millet, wheat flour and a mixture of these substances.
- gause_1936_AnE_f03.1 - Interaction between predators (Cheyletus eruditus) and prey (Aleuroglyphus agilis) with occasional immigration
- gause_1936_AnE_f03.3a - Interaction between predators (Cheyletus eruditus) and prey (Aleuroglyphus agilis) with artifical immigration
- gause_1936_AnE_f03.3b - Interaction between predators (Cheyletus eruditus) and prey (Aleuroglyphus agilis) with artifical immigration
- gause_1936_AnE_t02 - Interaction between predators (Cheyletus eruditus) and prey (Aleuroglyphus agilis)-Raw data
- gause_1936_AnE_t03 - Interaction between predators
- huffaker_1963 - Huffaker Mite Data
- mclaren_1994_f03 - Wolf, Moose, and Fir dynamics from Isle Royale
Last updated 1 years agofrom:52f2e616c1. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 15 2024 |
| R-4.5-win | OK | Nov 15 2024 |
| R-4.5-linux | OK | Nov 15 2024 |
| R-4.4-win | OK | Nov 15 2024 |
| R-4.4-mac | OK | Nov 15 2024 |
| R-4.3-win | OK | Nov 15 2024 |
| R-4.3-mac | OK | Nov 15 2024 |
Exports:gause_wrapperget_lagget_logisticlv_interactionlv_interaction_loglv_optimode_predictionpercap_growthtest_goodness_of_fit
Dependencies:deSolve
